No. words: 1088; after pruning: 1062


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.4 (1,1:513)  507  0.00 0.00 0.00  KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1        5   514 (28)  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   (36)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   546 
   80    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1    48 
   92  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   455 
  100    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1    68 
  104  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   443 
  144    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   112 
  172  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   375 
  264    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   232 
  268  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   279 
  296    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   264 
  312  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   235 
  392    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   360 
  400  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   147 
  404    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   372 
  408  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   139 
  424    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   392 
  432  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1   115 
  464    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   432 
  472  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1    75 
  492    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   460 
  496  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1    51 
  500    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   468 
  528  C KSU007_G09_BE404401Tu01P009A01A071R1_068.ab1    19 
  532    KSU006_G09_BE404401Tu01P009A01A071F1_068.ab1   500 
Contig length: old 574, new 574

Contig length: old 574, new 574
New start: 0