No. words: 1070; after pruning: 1044


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 4.2 (1,1:380)  353  0.00 0.53 0.00  KSU047_F11_BE404977Ld22P006B01B071F1_085.ab1        2   377 (166)  C KSU048_F11_BE404977Ld22P006B01B071R1_085.ab1   (146)   381     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C KSU048_F11_BE404977Ld22P006B01B071R1_085.ab1   527 
  431    KSU047_F11_BE404977Ld22P006B01B071F1_085.ab1   284 
Contig length: old 689, new 690

Contig length: old 690, new 690
New start: 0