No. words: 1072; after pruning: 1046


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:375)  334  0.80 0.53 0.53  KSU047_G12_BE404977Ld31P006B01B071F1_084.ab1        1   376 (173)  C KSU048_G12_BE404977Ld31P006B01B071R1_084.ab1   (147)   376     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C KSU048_G12_BE404977Ld31P006B01B071R1_084.ab1   523 
  423    KSU047_G12_BE404977Ld31P006B01B071F1_084.ab1   275 
  455  C KSU048_G12_BE404977Ld31P006B01B071R1_084.ab1    69 
  463    KSU047_G12_BE404977Ld31P006B01B071F1_084.ab1   315 
Contig length: old 696, new 697

Contig length: old 697, new 697
New start: 0