No. words: 1028; after pruning: 1002


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.6 (1,1:485)  474  0.62 0.00 0.00  KSU006_B05_BE405190As01P009B01B071F1_041.ab1        3   486 (29)  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   (29)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   513 
   62    KSU006_B05_BE405190As01P009B01B071F1_041.ab1    35 
   66  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   448 
   74    KSU006_B05_BE405190As01P009B01B071F1_041.ab1    47 
   82  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   432 
   90    KSU006_B05_BE405190As01P009B01B071F1_041.ab1    63 
   94  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   420 
  114    KSU006_B05_BE405190As01P009B01B071F1_041.ab1    87 
  170  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   344 
  190    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   163 
  206  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   308 
  214    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   187 
  218  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   296 
  274    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   247 
  282  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   232 
  298    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   271 
  306  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   208 
  354    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   327 
  362  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   152 
  374    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   347 
  378  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   136 
  382    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   355 
  386  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1   128 
  394    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   367 
  426  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1    88 
  438    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   411 
  450  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1    64 
  465    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   438 
  469  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1    45 
  473    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   446 
  477  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1    37 
  485    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   458 
  501  C KSU007_B05_BE405190As01P009B01B071R1_041.ab1    13 
  505    KSU006_B05_BE405190As01P009B01B071F1_041.ab1   478 
Contig length: old 542, new 542

Contig length: old 542, new 542
New start: 0