No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:479)  475  0.00 0.00 0.21  KSU008_E06_BE405190At01P009B01B071F1_039.ab1        1   480 (25)  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   (30)   479     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   509 
   58    KSU008_E06_BE405190At01P009B01B071F1_039.ab1    28 
   62  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   448 
   70    KSU008_E06_BE405190At01P009B01B071F1_039.ab1    40 
   86  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   424 
   90    KSU008_E06_BE405190At01P009B01B071F1_039.ab1    60 
   98  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   412 
  110    KSU008_E06_BE405190At01P009B01B071F1_039.ab1    80 
  114  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   396 
  138    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   108 
  150  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   360 
  154    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   124 
  162  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   348 
  178    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   148 
  182  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   328 
  206    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   176 
  222  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   288 
  230    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   200 
  238  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   272 
  242    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   212 
  258  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   252 
  262    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   232 
  266  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   244 
  270    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   240 
  274  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   236 
  290    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   260 
  310  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   200 
  326    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   296 
  362  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   148 
  370    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   340 
  382  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   128 
  390    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   360 
  394  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1   116 
  398    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   368 
  422  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1    88 
  434    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   404 
  450  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1    60 
  458    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   428 
  474  C KSU009_E06_BE405190At01P009B01B071R1_039.ab1    36 
  482    KSU008_E06_BE405190At01P009B01B071F1_039.ab1   452 
Contig length: old 534, new 535

Contig length: old 535, new 535
New start: 0