No. words: 1017; after pruning: 991


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:475)  471  0.00 0.00 0.21  KSU008_A03_BE405190At02P009B01B071F1_017.ab1        1   476 (34)  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   (32)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   507 
   64    KSU008_A03_BE405190At02P009B01B071F1_017.ab1    32 
   92  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   416 
   96    KSU008_A03_BE405190At02P009B01B071F1_017.ab1    64 
  100  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   408 
  108    KSU008_A03_BE405190At02P009B01B071F1_017.ab1    76 
  112  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   396 
  120    KSU008_A03_BE405190At02P009B01B071F1_017.ab1    88 
  136  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   372 
  148    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   116 
  156  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   352 
  160    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   128 
  164  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   344 
  184    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   152 
  192  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   316 
  208    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   176 
  228  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   280 
  236    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   204 
  240  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   268 
  248    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   216 
  260  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   248 
  272    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   240 
  312  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   196 
  316    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   284 
  372  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   136 
  392    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   360 
  400  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1   108 
  404    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   372 
  428  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1    80 
  432    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   400 
  476  C KSU009_A03_BE405190At02P009B01B071R1_017.ab1    32 
  484    KSU008_A03_BE405190At02P009B01B071F1_017.ab1   452 
Contig length: old 541, new 542

Contig length: old 542, new 542
New start: 0