No. words: 1027; after pruning: 1001


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.1 (1,1:480)  471  0.00 0.00 0.21  KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1        5   481 (40)  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   (30)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   506 
   63    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1    37 
   67  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   440 
   75    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1    49 
   83  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   424 
   91    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1    65 
  103  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   404 
  143    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   117 
  159  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   348 
  211    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   185 
  283  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   224 
  331    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   305 
  367  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   140 
  387    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   361 
  391  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1   116 
  395    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   369 
  411  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1    96 
  415    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   389 
  427  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1    80 
  435    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   409 
  439  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1    68 
  443    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   417 
  459  C KSU007_H09_BE405190Tu01P009B01B071R1_076.ab1    48 
  463    KSU006_H09_BE405190Tu01P009B01B071F1_076.ab1   437 
Contig length: old 546, new 547

Contig length: old 547, new 547
New start: 0