No. words: 1036; after pruning: 1010


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.7 (1,1:475)  464  0.00 0.00 0.42  KSU050_B01_BE405190Tu02P009B01B071F1_013.ab1        3   477 (41)  C KSU051_B01_BE405190Tu02P009B01B071R1_013.ab1   (45)   473     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C KSU051_B01_BE405190Tu02P009B01B071R1_013.ab1   518 
  241    KSU050_B01_BE405190Tu02P009B01B071F1_013.ab1   198 
Contig length: old 560, new 561

Contig length: old 561, new 561
New start: 0