No. words: 1057; after pruning: 1031


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.6 (1,1:487)  485  0.00 0.00 0.00  KSU002_C01_BE425301At01P006D01D071F1_002.ab1        1   486 (45)  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   (38)   488     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   526 
   54    KSU002_C01_BE425301At01P006D01D071F1_002.ab1    16 
   58  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   469 
   70    KSU002_C01_BE425301At01P006D01D071F1_002.ab1    32 
   78  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   449 
  102    KSU002_C01_BE425301At01P006D01D071F1_002.ab1    64 
  106  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   421 
  138    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   100 
  142  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   385 
  194    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   156 
  198  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   329 
  222    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   184 
  230  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   297 
  274    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   236 
  294  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   233 
  302    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   264 
  318  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   209 
  322    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   284 
  326  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   201 
  330    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   292 
  338  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   189 
  346    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   308 
  354  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   173 
  362    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   324 
  374  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1   153 
  406    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   368 
  466  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1    61 
  478    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   440 
  502  C KSU003_C01_BE425301At01P006D01D071R1_002.ab1    25 
  506    KSU002_C01_BE425301At01P006D01D071F1_002.ab1   468 
Contig length: old 569, new 569

Contig length: old 569, new 569
New start: 0