No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:493)  493  0.00 0.00 0.00  KSU002_A09_BE425301At02P006D01D071F1_065.ab1        1   494 (37)  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   (36)   494     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   530 
   52    KSU002_A09_BE425301At02P006D01D071F1_065.ab1    16 
   60  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   471 
  100    KSU002_A09_BE425301At02P006D01D071F1_065.ab1    64 
  104  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   427 
  108    KSU002_A09_BE425301At02P006D01D071F1_065.ab1    72 
  120  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   411 
  140    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   104 
  148  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   383 
  180    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   144 
  196  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   335 
  204    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   168 
  212  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   319 
  216    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   180 
  224  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   307 
  236    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   200 
  264  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   267 
  268    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   232 
  276  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   255 
  396    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   360 
  416  C KSU003_A09_BE425301At02P006D01D071R1_065.ab1   115 
  420    KSU002_A09_BE425301At02P006D01D071F1_065.ab1   384 
Contig length: old 567, new 567

Contig length: old 567, new 567
New start: 0