No. words: 1278; after pruning: 1252


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:486)  476  0.00 0.21 0.21  KSU012_A07_BE425301Ld01P006D01D071F1_063.ab1        1   487 (148)  C KSU013_A07_BE425301Ld01P006D01D071R1_063.ab1   (156)   487     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C KSU013_A07_BE425301Ld01P006D01D071R1_063.ab1   643 
  502    KSU012_A07_BE425301Ld01P006D01D071F1_063.ab1   345 
Contig length: old 791, new 792

Contig length: old 792, new 792
New start: 0