No. words: 1240; after pruning: 1214


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:481)  472  0.00 0.21 0.21  KSU012_B07_BE425301Ld02P006D01D071F1_061.ab1        1   482 (146)  C KSU013_B07_BE425301Ld02P006D01D071R1_061.ab1   (130)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C KSU013_B07_BE425301Ld02P006D01D071R1_061.ab1   612 
  476    KSU012_B07_BE425301Ld02P006D01D071F1_061.ab1   345 
Contig length: old 758, new 759

Contig length: old 759, new 759
New start: 0