No. words: 1289; after pruning: 1263


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:488)  479  0.00 0.20 0.20  KSU012_D07_BE425301Ld04P006D01D071F1_057.ab1        1   489 (142)  C KSU013_D07_BE425301Ld04P006D01D071R1_057.ab1   (169)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C KSU013_D07_BE425301Ld04P006D01D071R1_057.ab1   658 
  515    KSU012_D07_BE425301Ld04P006D01D071F1_057.ab1   345 
Contig length: old 800, new 801

Contig length: old 801, new 801
New start: 0