No. words: 1302; after pruning: 1276


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:493)  489  0.00 0.20 0.00  KSU012_F07_BE425301Ld06P006D01D071F1_053.ab1        1   494 (144)  C KSU013_F07_BE425301Ld06P006D01D071R1_053.ab1   (169)   495     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C KSU013_F07_BE425301Ld06P006D01D071R1_053.ab1   664 
  399    KSU012_F07_BE425301Ld06P006D01D071F1_053.ab1   229 
Contig length: old 808, new 808

Contig length: old 808, new 808
New start: 0