No. words: 1165; after pruning: 1139


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:488)  479  0.00 0.20 0.20  KSU012_B08_BE425301Ld10P006D01D071F1_062.ab1        1   489 (46)  C KSU013_B08_BE425301Ld10P006D01D071R1_062.ab1   (141)   489     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C KSU013_B08_BE425301Ld10P006D01D071R1_062.ab1   630 
  491    KSU012_B08_BE425301Ld10P006D01D071F1_062.ab1   349 
  547  C KSU013_B08_BE425301Ld10P006D01D071R1_062.ab1    84 
  555    KSU012_B08_BE425301Ld10P006D01D071F1_062.ab1   413 
  571  C KSU013_B08_BE425301Ld10P006D01D071R1_062.ab1    60 
  579    KSU012_B08_BE425301Ld10P006D01D071F1_062.ab1   437 
  583  C KSU013_B08_BE425301Ld10P006D01D071R1_062.ab1    48 
  595    KSU012_B08_BE425301Ld10P006D01D071F1_062.ab1   453 
  618  C KSU013_B08_BE425301Ld10P006D01D071R1_062.ab1    14 
  622    KSU012_B08_BE425301Ld10P006D01D071F1_062.ab1   480 
Contig length: old 676, new 677

Contig length: old 677, new 677
New start: 0