No. words: 1298; after pruning: 1272


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:494)  489  0.00 0.00 0.20  KSU012_D08_BE425301Ld12P006D01D071F1_058.ab1        1   495 (142)  C KSU013_D08_BE425301Ld12P006D01D071R1_058.ab1   (167)   494     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C KSU013_D08_BE425301Ld12P006D01D071R1_058.ab1   661 
  511    KSU012_D08_BE425301Ld12P006D01D071F1_058.ab1   344 
Contig length: old 803, new 804

Contig length: old 804, new 804
New start: 0