No. words: 1288; after pruning: 1262


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:493)  479  0.00 0.40 0.20  KSU012_G08_BE425301Ld15P006D01D071F1_052.ab1        1   494 (143)  C KSU013_G08_BE425301Ld15P006D01D071R1_052.ab1   (156)   495     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C KSU013_G08_BE425301Ld15P006D01D071R1_052.ab1   651 
  502    KSU012_G08_BE425301Ld15P006D01D071F1_052.ab1   344 
  614  C KSU013_G08_BE425301Ld15P006D01D071R1_052.ab1    38 
  618    KSU012_G08_BE425301Ld15P006D01D071F1_052.ab1   460 
Contig length: old 794, new 795

Contig length: old 795, new 795
New start: 0