No. words: 1097; after pruning: 1071


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 9.4 (1,1:531)  519  0.00 0.00 0.19  KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1        1   526 (21)  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   (19)   531     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   550 
   67    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1    48 
   71  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   480 
   95    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1    76 
  115  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   436 
  123    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   104 
  131  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   420 
  135    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   116 
  139  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   412 
  147    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   128 
  151  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   400 
  159    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   140 
  175  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   376 
  179    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   160 
  195  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   356 
  203    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   184 
  211  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   340 
  215    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   196 
  227  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   324 
  247    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   228 
  263  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   288 
  279    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   260 
  303  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   248 
  311    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   292 
  319  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   232 
  327    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   308 
  339  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   212 
  351    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   332 
  359  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1   192 
  363    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   344 
  491  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1    60 
  499    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   480 
  515  C KSU003_A05_BE425301Tu01P006D01D071R1_033.ab1    36 
  519    KSU002_A05_BE425301Tu01P006D01D071F1_033.ab1   500 
Contig length: old 565, new 566

Contig length: old 566, new 566
New start: 0