No. words: 1467; after pruning: 1441


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:778)  643  0.15 0.00 0.00  KSU006_D05_BE426016As01P009D01D071F1_042.ab1        1   664 (0)  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   (24)   779   116 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   803 
   28    KSU006_D05_BE426016As01P009D01D071F1_042.ab1     4 
   88  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   716 
   92    KSU006_D05_BE426016As01P009D01D071F1_042.ab1    68 
  388  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   416 
  392    KSU006_D05_BE426016As01P009D01D071F1_042.ab1   368 
  396  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   408 
  400    KSU006_D05_BE426016As01P009D01D071F1_042.ab1   376 
  412  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   392 
  464    KSU006_D05_BE426016As01P009D01D071F1_042.ab1   440 
  468  C KSU007_D05_BE426016As01P009D01D071R1_042.ab1   336 
Contig length: old 803, new 803

Contig length: old 803, new 803
New start: 0