No. words: 3180; after pruning: 3114


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:768)  743  0.26 0.00 0.00  KSU008_E11_BE426016As02P009D01D071F1_083.ab1        1   769 (33)  C KSU009_E11_BE426016As02P009D01D071R1_083.ab1   (20)   769     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.4 (2,1:17)  764  0.13 0.00 0.00  KSU008_E11_BE426016As02P009D01D071F1_083.ab1       18   802 (0)    KSU050_D07_BE426016As02P009D01D071F2_057.ab1        1   785 (15) *
Merge:(0)    0    0.0 16.1 (3,1:754)  726  0.40 0.00 0.00  KSU008_E11_BE426016As02P009D01D071F1_083.ab1        1   755 (47)  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   (34)   755     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       4 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  2246 nodes

 414 str. conn. components

Path
    1  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   789 
   50    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    16 
   59  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   731 
   63    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    29 
   66  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   724 
   67    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    33 
   74  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   716 
   78    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    44 
   86  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   704 
   95    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    61 
   98    KSU050_D07_BE426016As02P009D01D071F2_057.ab1    47 
   99    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    65 
  106    KSU050_D07_BE426016As02P009D01D071F2_057.ab1    55 
  110    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    76 
  119    KSU050_D07_BE426016As02P009D01D071F2_057.ab1    68 
  131    KSU008_E11_BE426016As02P009D01D071F1_083.ab1    97 
  138    KSU050_D07_BE426016As02P009D01D071F2_057.ab1    87 
  142  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   648 
  143    KSU050_D07_BE426016As02P009D01D071F2_057.ab1    92 
  419  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   371 
  559    KSU050_D07_BE426016As02P009D01D071F2_057.ab1   508 
  678  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1   112 
  706  C KSU009_E11_BE426016As02P009D01D071R1_083.ab1    98 
  714  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1    76 
  722  C KSU009_E11_BE426016As02P009D01D071R1_083.ab1    82 
  726    KSU050_D07_BE426016As02P009D01D071F2_057.ab1   675 
  727  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1    63 
  735    KSU050_D07_BE426016As02P009D01D071F2_057.ab1   684 
  738  C KSU009_E11_BE426016As02P009D01D071R1_083.ab1    66 
  740  C KSU051_D07_BE426016As02P009D01D071F2_057.ab1    50 
  746    KSU050_D07_BE426016As02P009D01D071F2_057.ab1   695 
  748  C KSU009_E11_BE426016As02P009D01D071R1_083.ab1    56 
  750    KSU050_D07_BE426016As02P009D01D071F2_057.ab1   699 
  778  C KSU009_E11_BE426016As02P009D01D071R1_083.ab1    26 
  798    KSU050_D07_BE426016As02P009D01D071F2_057.ab1   747 
Contig length: old 851, new 851

Contig length: old 851, new 851
New start: 0