No. words: 1497; after pruning: 1471


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:718)  697  0.28 0.00 0.00  KSU008_G06_BE426016At01P009D01D071F1_040.ab1        1   719 (34)  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   (25)   719     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   744 
   45    KSU008_G06_BE426016At01P009D01D071F1_040.ab1    20 
  285  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   460 
  289    KSU008_G06_BE426016At01P009D01D071F1_040.ab1   264 
  317  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   428 
  337    KSU008_G06_BE426016At01P009D01D071F1_040.ab1   312 
  361  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   384 
  373    KSU008_G06_BE426016At01P009D01D071F1_040.ab1   348 
  385  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   360 
  417    KSU008_G06_BE426016At01P009D01D071F1_040.ab1   392 
  421  C KSU009_G06_BE426016At01P009D01D071R1_040.ab1   324 
  729    KSU008_G06_BE426016At01P009D01D071F1_040.ab1   704 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0