No. words: 1517; after pruning: 1477


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:724)  707  0.14 0.00 0.00  KSU008_C03_BE426016At02P009D01D071F1_018.ab1        1   725 (37)  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   (30)   725     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   755 
   38    KSU008_C03_BE426016At02P009D01D071F1_018.ab1     8 
  406  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   350 
  426    KSU008_C03_BE426016At02P009D01D071F1_018.ab1   396 
  446  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   310 
  450    KSU008_C03_BE426016At02P009D01D071F1_018.ab1   420 
  470  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   286 
  574    KSU008_C03_BE426016At02P009D01D071F1_018.ab1   544 
  582  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   174 
  614    KSU008_C03_BE426016At02P009D01D071F1_018.ab1   584 
  622  C KSU009_C03_BE426016At02P009D01D071R1_018.ab1   134 
  750    KSU008_C03_BE426016At02P009D01D071F1_018.ab1   720 
Contig length: old 792, new 792

Contig length: old 792, new 792
New start: 0