No. words: 1123; after pruning: 1097


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.0 (1,1:933)  169  3.17 0.00 0.00  KSU006_B10_BE426016Tu01P009D01D071F1_077.ab1      484   672 (0)  C KSU007_B10_BE426016Tu01P009D01D071R1_077.ab1   (0)   451   263 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    KSU006_B10_BE426016Tu01P009D01D071F1_077.ab1     1 
  581  C KSU007_B10_BE426016Tu01P009D01D071R1_077.ab1   354 
  589    KSU006_B10_BE426016Tu01P009D01D071F1_077.ab1   589 
  597  C KSU007_B10_BE426016Tu01P009D01D071R1_077.ab1   338 
  605    KSU006_B10_BE426016Tu01P009D01D071F1_077.ab1   605 
  624  C KSU007_B10_BE426016Tu01P009D01D071R1_077.ab1   311 
  628    KSU006_B10_BE426016Tu01P009D01D071F1_077.ab1   628 
  632  C KSU007_B10_BE426016Tu01P009D01D071R1_077.ab1   303 
  636    KSU006_B10_BE426016Tu01P009D01D071F1_077.ab1   636 
  644  C KSU007_B10_BE426016Tu01P009D01D071R1_077.ab1   291 
Contig length: old 934, new 934

Contig length: old 934, new 934
New start: 0