No. words: 1887; after pruning: 1847


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.1 (1,1:927)  886  0.33 0.00 0.11  KSU050_D01_BE426016Tu02P009D01D071F1_009.ab1       13   929 (42)  C KSU051_D01_BE426016Tu02P009D01D071R1_009.ab1   (0)   916     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  448 nodes

 226 str. conn. components

Path
    1    KSU050_D01_BE426016Tu02P009D01D071F1_009.ab1     1 
  205  C KSU051_D01_BE426016Tu02P009D01D071R1_009.ab1   724 
  209    KSU050_D01_BE426016Tu02P009D01D071F1_009.ab1   209 
  373  C KSU051_D01_BE426016Tu02P009D01D071R1_009.ab1   556 
  397    KSU050_D01_BE426016Tu02P009D01D071F1_009.ab1   397 
  633  C KSU051_D01_BE426016Tu02P009D01D071R1_009.ab1   296 
  881    KSU050_D01_BE426016Tu02P009D01D071F1_009.ab1   881 
  903  C KSU051_D01_BE426016Tu02P009D01D071R1_009.ab1    26 
  921    KSU050_D01_BE426016Tu02P009D01D071F1_009.ab1   922 
Contig length: old 971, new 970

Contig length: old 970, new 970
New start: 0