No. words: 1073; after pruning: 1047


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:517)  500  0.00 0.58 0.19  KSU008_H06_BE426317At01P009F01F071F1_048.ab1        1   518 (23)  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   (12)   520     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   532 
   16    KSU008_H06_BE426317At01P009F01F071F1_048.ab1     4 
   20  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   513 
   87    KSU008_H06_BE426317At01P009F01F071F1_048.ab1    72 
   95  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   438 
  131    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   116 
  139  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   394 
  151    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   136 
  163  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   370 
  199    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   184 
  207  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   326 
  223    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   208 
  235  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   298 
  239    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   224 
  251  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   282 
  271    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   256 
  275  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   258 
  291    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   276 
  299  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   234 
  323    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   308 
  327  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   206 
  339    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   324 
  391  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   142 
  399    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   384 
  415  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1   118 
  435    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   420 
  439  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1    94 
  443    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   428 
  451  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1    82 
  459    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   444 
  463  C KSU009_H06_BE426317At01P009F01F071R1_048.ab1    70 
  479    KSU008_H06_BE426317At01P009F01F071F1_048.ab1   464 
Contig length: old 555, new 556

Contig length: old 556, new 556
New start: 0