No. words: 1487; after pruning: 1461


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:936)  525  0.36 0.00 0.18  KSU008_A07_BE438226At01P009G01G071F1_049.ab1      181   730 (0)  C KSU009_A07_BE438226At01P009G01G071R1_049.ab1   (0)   757   209 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    KSU008_A07_BE438226At01P009G01G071F1_049.ab1     1 
  438  C KSU009_A07_BE438226At01P009G01G071R1_049.ab1   501 
  442    KSU008_A07_BE438226At01P009G01G071F1_049.ab1   442 
  458  C KSU009_A07_BE438226At01P009G01G071R1_049.ab1   481 
  466    KSU008_A07_BE438226At01P009G01G071F1_049.ab1   466 
  474  C KSU009_A07_BE438226At01P009G01G071R1_049.ab1   465 
  482    KSU008_A07_BE438226At01P009G01G071F1_049.ab1   482 
  498  C KSU009_A07_BE438226At01P009G01G071R1_049.ab1   441 
  526    KSU008_A07_BE438226At01P009G01G071F1_049.ab1   526 
  534  C KSU009_A07_BE438226At01P009G01G071R1_049.ab1   405 
Contig length: old 937, new 938

Contig length: old 938, new 938
New start: 0