No. words: 1598; after pruning: 1572


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:953)  623  0.16 0.00 0.00  KSU008_E03_BE438226At02P009G01G071F1_019.ab1       82   725 (0)  C KSU009_E03_BE438226At02P009G01G071R1_019.ab1   (0)   873   230 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    KSU008_E03_BE438226At02P009G01G071F1_019.ab1     1 
  429  C KSU009_E03_BE438226At02P009G01G071R1_019.ab1   526 
  449    KSU008_E03_BE438226At02P009G01G071F1_019.ab1   449 
  457  C KSU009_E03_BE438226At02P009G01G071R1_019.ab1   498 
  473    KSU008_E03_BE438226At02P009G01G071F1_019.ab1   473 
  481  C KSU009_E03_BE438226At02P009G01G071R1_019.ab1   474 
  497    KSU008_E03_BE438226At02P009G01G071F1_019.ab1   497 
  501  C KSU009_E03_BE438226At02P009G01G071R1_019.ab1   454 
  505    KSU008_E03_BE438226At02P009G01G071F1_019.ab1   505 
  521  C KSU009_E03_BE438226At02P009G01G071R1_019.ab1   434 
Contig length: old 954, new 954

Contig length: old 954, new 954
New start: 0