No. words: 1319; after pruning: 1293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -5.5 -5.5 (1,1:790)  378  9.09 0.00 0.00  KSU004_G06_BE438268As02P006E01E071F1_040.ab1      111   638 (0)  C KSU005_G06_BE438268As02P006E01E071R1_040.ab1   (0)   681   154 *
  Worst pair: offset 0 
LLR breakdown: discreps: -16.2 (<20 part: -13.7 (#=47), >20:-2.5 (#=1); in HQ: -16.2, out HQ 0.0), match: 10.7  total: -5.5  378  9.09 0.00 0.00  KSU004_G06_BE438268As02P006E01E071F1_040.ab1      111   638 (0)  C KSU005_G06_BE438268As02P006E01E071R1_040.ab1   (0)   681   154 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.5       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    KSU005_G06_BE438268As02P006E01E071R1_040.ab1     1 
Contig length: old 681, new 681

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    KSU004_G06_BE438268As02P006E01E071F1_040.ab1     1 
Contig length: old 638, new 638