No. words: 1660; after pruning: 1634


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.0 (1,1:812)  792  0.00 0.12 0.00  KSU002_D01_BE438268At01P006E01E071F1_010.ab1        1   813 (23)  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   (10)   814     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   824 
   20    KSU002_D01_BE438268At01P006E01E071F1_010.ab1     9 
  340  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   485 
  352    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   341 
  360  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   465 
  364    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   353 
  380  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   445 
  388    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   377 
  392  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   433 
  400    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   389 
  416  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   409 
  420    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   409 
  432  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   393 
  460    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   449 
  464  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   361 
  472    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   461 
  476  C KSU003_D01_BE438268At01P006E01E071R1_010.ab1   349 
  820    KSU002_D01_BE438268At01P006E01E071F1_010.ab1   809 
Contig length: old 847, new 847

Contig length: old 847, new 847
New start: 0