No. words: 1657; after pruning: 1631


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:820)  793  0.24 0.12 0.00  KSU002_B09_BE438268At02P006E01E071F1_073.ab1        4   821 (17)  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   (0)   819     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    KSU002_B09_BE438268At02P006E01E071F1_073.ab1     1 
    8  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   815 
   17    KSU002_B09_BE438268At02P006E01E071F1_073.ab1    16 
  313  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   510 
  337    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   336 
  345  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   478 
  353    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   352 
  361  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   462 
  369    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   368 
  377  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   446 
  409    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   408 
  429  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   394 
  433    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   432 
  437  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   386 
  457    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   456 
  461  C KSU003_B09_BE438268At02P006E01E071R1_073.ab1   362 
  818    KSU002_B09_BE438268At02P006E01E071F1_073.ab1   817 
Contig length: old 838, new 839

Contig length: old 839, new 839
New start: 0