No. words: 1516; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:789)  685  0.14 0.00 0.00  KSU014_C03_BE438268Ld03P006E01E071F1_027.ab1       93   790 (28)  C KSU015_C03_BE438268Ld03P006E01E071R1_027.ab1   (0)   698     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1    KSU014_C03_BE438268Ld03P006E01E071F1_027.ab1     1 
  272  C KSU015_C03_BE438268Ld03P006E01E071R1_027.ab1   519 
  787    KSU014_C03_BE438268Ld03P006E01E071F1_027.ab1   787 
Contig length: old 818, new 818

Contig length: old 818, new 818
New start: 0