No. words: 1386; after pruning: 1346


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:785)  578  0.17 0.17 0.33  KSU014_A04_BE438268Ld09P006E01E071F1_032.ab1      127   727 (0)  C KSU015_A04_BE438268Ld09P006E01E071R1_032.ab1   (0)   659    60 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    KSU014_A04_BE438268Ld09P006E01E071F1_032.ab1     1 
  313  C KSU015_A04_BE438268Ld09P006E01E071R1_032.ab1   474 
  429    KSU014_A04_BE438268Ld09P006E01E071F1_032.ab1   429 
  497  C KSU015_A04_BE438268Ld09P006E01E071R1_032.ab1   290 
  533    KSU014_A04_BE438268Ld09P006E01E071F1_032.ab1   533 
  541  C KSU015_A04_BE438268Ld09P006E01E071R1_032.ab1   246 
Contig length: old 786, new 786

Contig length: old 786, new 786
New start: 0