No. words: 1529; after pruning: 1503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:812)  672  0.29 0.00 0.14  KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1        1   697 (0)  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   (20)   812   117 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   832 
   28    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1     8 
  148  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   685 
  152    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   132 
  272  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   561 
  280    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   260 
  312  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   521 
  316    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   296 
  320  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   513 
  324    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   304 
  328  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   505 
  356    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   336 
  364  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   469 
  368    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   348 
  372  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   461 
  380    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   360 
  388  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   445 
  400    KSU002_B05_BE438268Tu01P006E01E071F1_041.ab1   380 
  404  C KSU003_B05_BE438268Tu01P006E01E071R1_041.ab1   429 
Contig length: old 832, new 832

Contig length: old 832, new 832
New start: 0