No. words: 1330; after pruning: 1291


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:287)  283  0.00 0.00 0.35  KSU014_B05_BE442631Ld02P006F01F071F1_045.ab1        1   288 (170)  C KSU015_B05_BE442631Ld02P006F01F071R1_045.ab1   (144)   287     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 2:  142 nodes

 73 str. conn. components

Path
    1  C KSU015_B05_BE442631Ld02P006F01F071R1_045.ab1   431 
  276    KSU014_B05_BE442631Ld02P006F01F071F1_045.ab1   132 
  284  C KSU015_B05_BE442631Ld02P006F01F071R1_045.ab1   148 
  344    KSU014_B05_BE442631Ld02P006F01F071F1_045.ab1   200 
Contig length: old 601, new 602

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    KSU044_B11_BE442631Ld02P006F01F071R2_093.ab1     1 
Contig length: old 441, new 441

Contig length: old 602, new 602
New start: 0