No. words: 1761; after pruning: 1709


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:282)  282  0.00 0.00 0.00  KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1        1   283 (163)  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1   (146)   283     1 *
Merge:(0)    0    0.0 6.2 (1,1:284)  280  0.00 0.00 0.35  KSU014_C05_BE442631Ld03P006F01F071F1_043.ab1        1   285 (173)  C KSU015_C05_BE442631Ld03P006F01F071R1_043.ab1   (144)   284     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  144 nodes

 74 str. conn. components

Path
    1  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1   429 
  218    KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1    72 
  222  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1   208 
  290    KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1   144 
  322  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1   108 
  342    KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1   196 
  350  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1    80 
  366    KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1   220 
  390  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1    40 
  394    KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1   248 
  398  C KSU044_C11_BE442631Ld03P006F01F071R2_091.ab1    32 
  402    KSU043_C11_BE442631Ld03P006F01F071F2_091.ab1   256 
Contig length: old 592, new 592

Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C KSU015_C05_BE442631Ld03P006F01F071R1_043.ab1   428 
  220    KSU014_C05_BE442631Ld03P006F01F071F1_043.ab1    76 
  228  C KSU015_C05_BE442631Ld03P006F01F071R1_043.ab1   201 
  288    KSU014_C05_BE442631Ld03P006F01F071F1_043.ab1   144 
Contig length: old 601, new 602

Contig length: old 592, new 592
New start: 0 

Contig length: old 602, new 602
New start: 0