No. words: 1793; after pruning: 1741


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:5)  452  0.00 0.22 0.00  KSU014_E05_BE442631Ld05P006F01F071F1_039.ab1        7   463 (0)    KSU043_E11_BE442631Ld05P006F01F071F2_087.ab1        1   458 (14) *
Merge:(0)    0    0.0 6.3 (2,1:287)  282  0.00 0.00 0.00  KSU043_E11_BE442631Ld05P006F01F071F2_087.ab1        1   283 (189)  C KSU044_E11_BE442631Ld05P006F01F071R2_087.ab1   (146)   283     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 1:  508 nodes

 189 str. conn. components

Path
    1  C KSU044_E11_BE442631Ld05P006F01F071R2_087.ab1   429 
  221    KSU043_E11_BE442631Ld05P006F01F071F2_087.ab1    75 
  222  C KSU044_E11_BE442631Ld05P006F01F071R2_087.ab1   208 
  274    KSU043_E11_BE442631Ld05P006F01F071F2_087.ab1   128 
  286  C KSU044_E11_BE442631Ld05P006F01F071R2_087.ab1   144 
  337    KSU043_E11_BE442631Ld05P006F01F071F2_087.ab1   191 
  381    KSU014_E05_BE442631Ld05P006F01F071F1_039.ab1   240 
  601    KSU043_E11_BE442631Ld05P006F01F071F2_087.ab1   455 
Contig length: old 618, new 618

Contig length: old 618, new 618
New start: 0