No. words: 700; after pruning: 674


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.7 (1,1:336)  203  0.48 0.00 0.00  KSU043_G12_BE442811Ld07P006H01H071F2_084.ab1        5   213 (0)  C KSU044_G12_BE442811Ld07P006H01H071R2_084.ab1   (154)   333   125 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C KSU044_G12_BE442811Ld07P006H01H071R2_084.ab1   487 
Contig length: old 487, new 487

Contig length: old 487, new 487
New start: 0