No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:352)  342  0.00 0.57 0.00  KSU022_B03_BE443190Ld02P009A02A081F1_029.ab1        1   352 (167)  C KSU023_B03_BE443190Ld02P009A02A081R1_029.ab1   (166)   354     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C KSU023_B03_BE443190Ld02P009A02A081R1_029.ab1   520 
  424    KSU022_B03_BE443190Ld02P009A02A081F1_029.ab1   256 
Contig length: old 686, new 687

Contig length: old 687, new 687
New start: 0