No. words: 1034; after pruning: 1008


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 5.4 (1,1:355)  341  0.00 0.57 0.00  KSU022_B04_BE443190Ld10P009A02A081F1_030.ab1        1   350 (166)  C KSU023_B04_BE443190Ld10P009A02A081R1_030.ab1   (161)   357     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C KSU023_B04_BE443190Ld10P009A02A081R1_030.ab1   518 
  418    KSU022_B04_BE443190Ld10P009A02A081F1_030.ab1   255 
Contig length: old 678, new 679

Contig length: old 679, new 679
New start: 0