No. words: 1038; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 5.4 (1,1:356)  341  0.00 0.57 0.00  KSU022_C04_BE443190Ld11P009A02A081F1_028.ab1        2   351 (167)  C KSU023_C04_BE443190Ld11P009A02A081R1_028.ab1   (163)   357     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C KSU023_C04_BE443190Ld11P009A02A081R1_028.ab1   520 
  429    KSU022_C04_BE443190Ld11P009A02A081F1_028.ab1   265 
Contig length: old 681, new 682

Contig length: old 682, new 682
New start: 0