No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.4 (1,1:368)  357  0.00 0.00 0.27  KSU022_D04_BE443190Ld12P009A02A081F1_026.ab1        5   369 (91)  C KSU023_D04_BE443190Ld12P009A02A081R1_026.ab1   (179)   364     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1  C KSU023_D04_BE443190Ld12P009A02A081R1_026.ab1   543 
  431    KSU022_D04_BE443190Ld12P009A02A081F1_026.ab1   256 
  479  C KSU023_D04_BE443190Ld12P009A02A081R1_026.ab1    65 
  499    KSU022_D04_BE443190Ld12P009A02A081F1_026.ab1   324 
Contig length: old 634, new 635

Contig length: old 635, new 635
New start: 0