No. words: 971; after pruning: 945


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.0 (1,1:474)  453  0.21 0.00 0.42  KSU008_B12_BE443253As02P009B02B081F1_093.ab1        1   473 (5)  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   (19)   474     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   493 
   27    KSU008_B12_BE443253As02P009B02B081F1_093.ab1     8 
   35  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   459 
   81    KSU008_B12_BE443253As02P009B02B081F1_093.ab1    62 
   93  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   401 
  101    KSU008_B12_BE443253As02P009B02B081F1_093.ab1    82 
  125  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   369 
  137    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   118 
  145  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   349 
  193    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   174 
  197  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   297 
  209    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   190 
  225  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   269 
  229    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   210 
  237  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   257 
  269    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   250 
  285  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   209 
  297    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   278 
  325  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   169 
  329    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   310 
  333  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   161 
  337    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   318 
  345  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   149 
  349    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   330 
  357  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   137 
  365    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   346 
  373  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   121 
  377    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   358 
  385  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1   109 
  401    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   382 
  454  C KSU009_B12_BE443253As02P009B02B081R1_093.ab1    41 
  458    KSU008_B12_BE443253As02P009B02B081F1_093.ab1   439 
Contig length: old 496, new 497

Contig length: old 497, new 497
New start: 0