No. words: 1357; after pruning: 1331


Histogram of relative pair offsets, for read pairs with multiple alignments:
64     8
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 8.8 (1,1:660)  585  2.91 0.00 0.00  KSU008_C12_BE443291As02P009C02C081F1_086.ab1        1   654 (28)  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   (14)   661     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   675 
   18    KSU008_C12_BE443291As02P009C02C081F1_086.ab1     4 
   26  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   650 
   30    KSU008_C12_BE443291As02P009C02C081F1_086.ab1    16 
  455  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   221 
  459    KSU008_C12_BE443291As02P009C02C081F1_086.ab1   445 
  487  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   189 
  491    KSU008_C12_BE443291As02P009C02C081F1_086.ab1   477 
  551  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   125 
  555    KSU008_C12_BE443291As02P009C02C081F1_086.ab1   541 
  567  C KSU009_C12_BE443291As02P009C02C081R1_086.ab1   109 
  663    KSU008_C12_BE443291As02P009C02C081F1_086.ab1   649 
Contig length: old 696, new 696

Contig length: old 696, new 696
New start: 0