No. words: 1087; after pruning: 1061


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:522)  510  0.00 0.00 0.00  KSU008_H03_BE443291At02P009C02C081F1_028.ab1        1   523 (20)  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   (21)   523     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   544 
   41    KSU008_H03_BE443291At02P009C02C081F1_028.ab1    20 
   49  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   496 
   69    KSU008_H03_BE443291At02P009C02C081F1_028.ab1    48 
   73  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   472 
   93    KSU008_H03_BE443291At02P009C02C081F1_028.ab1    72 
  125  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   420 
  133    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   112 
  137  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   408 
  149    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   128 
  157  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   388 
  181    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   160 
  201  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   344 
  209    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   188 
  257  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   288 
  273    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   252 
  333  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   212 
  349    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   328 
  357  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   188 
  369    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   348 
  373  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   172 
  385    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   364 
  389  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   156 
  409    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   388 
  441  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1   104 
  445    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   424 
  453  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1    92 
  465    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   444 
  505  C KSU009_H03_BE443291At02P009C02C081R1_028.ab1    40 
  513    KSU008_H03_BE443291At02P009C02C081F1_028.ab1   492 
Contig length: old 564, new 564

Contig length: old 564, new 564
New start: 0