No. words: 1197; after pruning: 1171


Histogram of relative pair offsets, for read pairs with multiple alignments:
63     2
65     2
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.9 (1,1:555)  525  0.00 0.36 0.36  KSU050_C02_BE443291Tu02P009C02C081F1_012.ab1        1   555 (42)  C KSU051_C02_BE443291Tu02P009C02C081R1_012.ab1   (43)   557     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C KSU051_C02_BE443291Tu02P009C02C081R1_012.ab1   600 
   99    KSU050_C02_BE443291Tu02P009C02C081F1_012.ab1    54 
  119  C KSU051_C02_BE443291Tu02P009C02C081R1_012.ab1   482 
  415    KSU050_C02_BE443291Tu02P009C02C081F1_012.ab1   370 
  499  C KSU051_C02_BE443291Tu02P009C02C081R1_012.ab1   102 
  507    KSU050_C02_BE443291Tu02P009C02C081F1_012.ab1   462 
Contig length: old 641, new 642

Contig length: old 642, new 642
New start: 0