No. words: 1489; after pruning: 1463


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 6.0 (1,1:589)  563  0.17 0.00 0.17  KSU043_B07_BE443500Ld02P009D02D081F2_061.ab1        6   590 (140)  C KSU044_B07_BE443500Ld02P009D02D081R2_061.ab1   (175)   584     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C KSU044_B07_BE443500Ld02P009D02D081R2_061.ab1   759 
  191    KSU043_B07_BE443500Ld02P009D02D081F2_061.ab1    21 
  260  C KSU044_B07_BE443500Ld02P009D02D081R2_061.ab1   500 
  268    KSU043_B07_BE443500Ld02P009D02D081F2_061.ab1    98 
  276  C KSU044_B07_BE443500Ld02P009D02D081R2_061.ab1   484 
  600    KSU043_B07_BE443500Ld02P009D02D081F2_061.ab1   430 
Contig length: old 899, new 900

Contig length: old 900, new 900
New start: 0