No. words: 1460; after pruning: 1434


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:575)  550  0.17 0.00 0.35  KSU043_C07_BE443500Ld03P009D02D081F2_059.ab1        1   577 (146)  C KSU044_C07_BE443500Ld03P009D02D081R2_059.ab1   (162)   575     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C KSU044_C07_BE443500Ld03P009D02D081R2_059.ab1   737 
  173    KSU043_C07_BE443500Ld03P009D02D081F2_059.ab1    11 
  201  C KSU044_C07_BE443500Ld03P009D02D081R2_059.ab1   537 
  209    KSU043_C07_BE443500Ld03P009D02D081F2_059.ab1    47 
  217  C KSU044_C07_BE443500Ld03P009D02D081R2_059.ab1   521 
  257    KSU043_C07_BE443500Ld03P009D02D081F2_059.ab1    95 
  265  C KSU044_C07_BE443500Ld03P009D02D081R2_059.ab1   473 
  457    KSU043_C07_BE443500Ld03P009D02D081F2_059.ab1   295 
Contig length: old 884, new 885

Contig length: old 885, new 885
New start: 0 
S Change at: 169; seg lengths: entry 1, contig 1