No. words: 1468; after pruning: 1428


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:584)  563  0.17 0.00 0.17  KSU043_D07_BE443500Ld04P009D02D081F2_057.ab1        1   585 (152)  C KSU044_D07_BE443500Ld04P009D02D081R2_057.ab1   (147)   584     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C KSU044_D07_BE443500Ld04P009D02D081R2_057.ab1   731 
  162    KSU043_D07_BE443500Ld04P009D02D081F2_057.ab1    15 
  174  C KSU044_D07_BE443500Ld04P009D02D081R2_057.ab1   558 
  178    KSU043_D07_BE443500Ld04P009D02D081F2_057.ab1    31 
  186  C KSU044_D07_BE443500Ld04P009D02D081R2_057.ab1   546 
  194    KSU043_D07_BE443500Ld04P009D02D081F2_057.ab1    47 
  198  C KSU044_D07_BE443500Ld04P009D02D081R2_057.ab1   534 
  242    KSU043_D07_BE443500Ld04P009D02D081F2_057.ab1    95 
  246  C KSU044_D07_BE443500Ld04P009D02D081R2_057.ab1   486 
  622    KSU043_D07_BE443500Ld04P009D02D081F2_057.ab1   475 
Contig length: old 883, new 884

Contig length: old 884, new 884
New start: 0 
S Change at: 154; seg lengths: entry 1, contig 1
S Change at: 774; seg lengths: entry 1, contig 1