No. words: 1474; after pruning: 1434


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:575)  550  0.17 0.17 0.17  KSU043_E07_BE443500Ld05P009D02D081F2_055.ab1        1   576 (173)  C KSU044_E07_BE443500Ld05P009D02D081R2_055.ab1   (149)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C KSU044_E07_BE443500Ld05P009D02D081R2_055.ab1   725 
  164    KSU043_E07_BE443500Ld05P009D02D081F2_055.ab1    15 
  168  C KSU044_E07_BE443500Ld05P009D02D081R2_055.ab1   558 
  179    KSU043_E07_BE443500Ld05P009D02D081F2_055.ab1    29 
  187  C KSU044_E07_BE443500Ld05P009D02D081R2_055.ab1   539 
  195    KSU043_E07_BE443500Ld05P009D02D081F2_055.ab1    45 
  235  C KSU044_E07_BE443500Ld05P009D02D081R2_055.ab1   491 
  243    KSU043_E07_BE443500Ld05P009D02D081F2_055.ab1    93 
  251  C KSU044_E07_BE443500Ld05P009D02D081R2_055.ab1   475 
  431    KSU043_E07_BE443500Ld05P009D02D081F2_055.ab1   281 
Contig length: old 898, new 899

Contig length: old 899, new 899
New start: 0 
S Change at: 156; seg lengths: entry 1, contig 1
S Change at: 776; seg lengths: entry 1, contig 1