No. words: 1472; after pruning: 1432


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:570)  533  0.70 0.35 0.18  KSU043_F07_BE443500Ld06P009D02D081F2_053.ab1        1   571 (175)  C KSU044_F07_BE443500Ld06P009D02D081R2_053.ab1   (154)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C KSU044_F07_BE443500Ld06P009D02D081R2_053.ab1   726 
  166    KSU043_F07_BE443500Ld06P009D02D081F2_053.ab1    12 
  170  C KSU044_F07_BE443500Ld06P009D02D081R2_053.ab1   557 
  578    KSU043_F07_BE443500Ld06P009D02D081F2_053.ab1   422 
Contig length: old 901, new 902

Contig length: old 902, new 902
New start: 0 
S Change at: 777; seg lengths: entry 1, contig 1